.. _API: ############# API Reference ############# YANK's API allows users to setup and run their own simulations in programmatic ways. If you would rather run YANK with YAML input files, please see the command line interface and the YAML options. .. toctree:: :maxdepth: 2 experiment_api mpi_api multistate_api/index pipeline_api restraints_api utils_api yank_api